Original Papers
36) Kentaro Takahama, Arisa Miyawaki, Takumi Shitara, Keita Mitsuya, Masayuki Morikawa, Masaki Hagihara, Katsuhito Kino, Ayumu Yamamoto and Takanori Oyoshi
G-quadruplex DNA- and RNA-Specific-Binding Proteins Engineered from the RGG Domain of TLS/FUS
ACS Chemical Biology, in press
35) Li-Ping Bai, Masaki Hagihara, Kazuhiko Nakatani, Zhi-Hong Jiang
Recognition of Chelerythrine to Human Telomeric DNA and RNA G-Quadruplexes
Scientific Reports, 2014, Article number: 6767
DOI: 10.1038/srep06767 PMID: 25341562
34) Changfeng Hong, Takahiro Otabe, Saki Matsumoto, Chikara Dohno, Asako Murata, Masaki Hagihara, Kazuhiko Nakatani
Formation of Ligand-Assisted Complex of Two RNA Hairpin Loops
Chemistry European Journal, 2014, 20, 5282-5287
DOI: 10.1002/chem.201304683 PMID: 24644006
33) Chikara Dohno, Izumi Kohyama, Maki Kimura, Masaki Hagihara, and Kazuhiko Nakatani
A Synthetic Riboswitch that Operates Using a Rationally Designed Ligand-RNA Pair
Angewandte Chemie International Edition, 2013, 52, 9976-9979
DOI: 10.1002/anie.201303370. PMID: 24030897
32) Gosuke Hayashi, Changfeng Hong, Masaki Hagihara, Kazuhiko Nakatani
Activation of Prokaryotic Translation by Antisense Oligonucleotides Binding to Coding Region of mRNA
Biochemical and Biophysical Research Communications, 2012, 429, 105-110
DOI: 10.1016/j.bbrc.2012.10.072 PMID: 23111330
31) Hiroki Nakagawa, Mariko Toda, Hiroshi Atsumi, Masaki Hagihara, Mitsuko Hayashi-Nishino, Chikara Dohno, Kazuhiko Nakatani
Assembly of a Small DNA Rectangular Parallelepiped Block into Higher Order Nanostructures
Chemistry Letters, 2012, 41, 1550-1552
DOI: 10.1246/cl.2012.1550
30) Shiori Umemoto, Seongwang Im, Jinhua Zhang, Masaki Hagihara, Asako Murata, Yasue Harada, Takeo Fukuzumi, Takahiro Wazaki, Shin-ichi Sasaoka, and Kazuhiko Nakatani
Structure-Activity Studies on the Fluorescent Indicator in the Displacement Assay for the Screening of Small Molecules Binding to RNA
Chemistry European Journal, 2012, 18, 9999–10008
DOI: 10.1002/chem.201103932 PMID: 22763984
29) Masaki Hagihara, Hanping He, Maki Kimura, Kazuhiko Nakatani
A Small Molecule Regulates Hairpin Structures in d(CGG) Trinucleotide Repeats
Bioorganic & Medicinal Chemistry Letters, 2012, 22, 2000–2003
DOI: 10.1016/j.bmcl.2012.01.030 PMID: 22326165
28) Masaki Hagihara, He Hanping, Kazuhiko Nakatani
Small Molecule Modulates Hairpin Structures in CAG Trinucleotide Repeats
ChemBioChem, 2011, 12, 1686–1689
DOI: 10.1002/cbic.201100260 PMID: 21695756
27) Changfeng Hong, Masaki Hagihara, Kazuhiko Nakatani
Ligand-Assisted Complex of Two DNA Hairpin Loops
Angewandte Chemie International Edition, 2011, 50, 4390–4393
DOI: 10.1002/anie.201100075 PMID: 21484973
26) Masaki Hagihara, Lisa Yamauchi, Akiko Seo, Keisuke Yoneda, Mayo Senda, Kazuhiko Nakatani
Antisense-Induced Guanine Quadruplexes Inhibit Reverse Transcription by HIV-1 Reverse Transcriptase
Journal of the American Chemical Society, 2010, 132, 11171–11178
DOI: 10.1021/ja1032088 PMID: 20698683
25) Masaki Hagihara, Keisuke Yoneda, Hiroaki Yabuuchi, Yasushi Okuno, Kazuhiko Nakatani
A Reverse Transcriptase Stop Assay Revealed Diverse Quadruplex Formations in UTRs in mRNA
Bioorganic & Medicinal Chemistry Letters, 2010, 20, 2350–2353
DOI: 10.1016/j.bmcl.2010.01.158 PMID: 20206514
24) Hanping He, Masaki Hagihara, Kazuhiko Nakatani
Small Molecule Affecting the Replication of Trinucleotide Repeat d(GAA)n
Chemistry – A European Journal, 2009, 15, 10641–10648
DOI: 10.1002/chem.200901088. PMID: 19718722
23) Fumie Takei, Masako Igarashi, Masaki Hagihara, Yoshimi Oka, Yoshihiro Soya, Kazuhiko Nakatani,
Secondary Structure-Inducible Ligand Fluorescence Coupled with PCR
Angewandte Chemie International Edition, 2009, 48, 7822–7824
DOI: 10.1002/anie.200902449. PMID: 19746492
22) Marcelo D. Vinces, Matthieu Legendre, Marina Caldara, Masaki Hagihara, Kevin J. Verstrepen
Unstable Tandem Repeats in Promoters Confer Transcriptional Evolvability
Science, 2009, 324, 1213–1216
DOI: 10.1126/science.1170097. PMID: 19478187
21) Gosuke Hayashi, Masaki Hagihara, Kazuhiko Nakatani
RNA Aptamers that Reversibly Bind Photoresponsive Azobenzene-Containing Peptides
Chemistry – A European Journal, 2009, 15, 424–432
DOI: 10.1002/chem.200800936. PMID: 19035601
20) Li-Ping Bai, Masaki Hagihara, Zhi-Hong Jiang, Kazuhiko Nakatani
Ligand Binding to Tandem G-Quadruplexes from Human Telomeric DNA
ChemBioChem, 2008, 9, 2583–2587
DOI: 10.1002/cbic.200800256. PMID: 18855963
19) Gosuke Hayashi, Masaki Hagihara, Kazuhiko Nakatani
Genotyping by Allele-Specific L-DNA-Tagged PCR
Journal of Biotechnology 2008, 135, 157–160
DOI: 10.1016/j.jbiotec.2008.03.011 PMID: 18457894
18) Tao Peng, Hanping He, Masaki Hagihara, Kazuhiko Nakatani
DNA Labeling by Ligand Inducible Secondary Structure
ChemBioChem, 2008, 12, 1893–1897
DOI: 10.1002/cbic.200800254. PMID: 18655077
17) Tetsuya Hasegawa, Masaki Hagihara, Masatora Fukuda, Shun Nakano, Nobutaka Fujieda, Takashi Morii
Context-Dependent Fluorescence Detection of a Phosphorylated Tyrosine Residue by a Ribonucleopeptide
Journal of the American Chemical Society, 2008, 130, 8804–8812
DOI: 10.1021/ja801734f. PMID: 18597435
16) Masaki Hagihara, Yuki Goto, Kazuhiko Nakatani
Ligand-Stabilized Hairpin Structures Interfered with Elongation of Human Telomere
ChemBioChem 2008, 9, 510–513
DOI: 10.1002/cbic.200700667. PMID: 18224632
15) Tetsuya Hasegawa, Masaki Hagihara, Masatora Fukuda, Takashi Morii
Stepwise Functionalization of Ribonucleopeptides: Optimization of the Response of Fluorescent Ribonucleopeptide Sensors for ATP.
Nucleosides, Nucleotides, & Nucleic Acids 2007, 26, 1277–1281
DOI: 10.1080/15257770701530491 PMID: 18066768
14) Gosuke Hayashi, Masaki Hagihara, Chikara Dohno, Kazuhiko Nakatani
Photoregulation of a Peptide-RNA Interaction on a Gold Surface
Journal of the American Chemical Society 2007, 129, 8678–8679
DOI: 10.1021/ja071298x PMID: 17580946
13) Fumie Takei, Hitoshi Suda, Masaki Hagihara, Zhang Jinhua, Akio Kobori, Kazuhiko Nakatani
Allele Specific C-Bulge Probes with One Unique Fluorescent Molecule Discriminate the Single Nucleotide Polymorphism in DNA
Chemistry – A European Journal 2007, 13, 4452-4457
DOI: 10.1002/chem.200601496 PMID: 17352435
12) Yuki Goto, Shinya Hagihara, Masaki Hagihara, Kazuhiko Nakatani
Small-Molecule Binding to the Nonquadruplex Form of the Human Telomeric Sequence
ChemBioChem 2007, 8, 723–726
DOI: 10.1002/cbic.200600564 PMID: 17393547
11) Gosuke Hayashi, Masaki Hagihara, Akio Kobori, Kazuhiko Nakatani
Detection of L-DNA-Tagged PCR Products by Surface Plasmon Resonance Imaging
ChemBioChem 2007, 8, 169-171
DOI: 10.1002/cbic.200600477 PMID: 17195256
10) Masaki Hagihara, Masatora Fukuda, Tetsuya Hasegawa, Takashi Morii
A Modular Strategy for Tailoring Fluorescent Biosensors from Ribonucleopeptide Complexes
Journal of the American Chemical Society 2006, 128, 12932-12940
DOI: 10.1021/ja063965c PMID: 17002390
9) Kazuhiko Nakatani, Shinya Hagihara, Yuki Goto, Akio Kobori, Masaki Hagihara, Gosuke Hayashi, Motoki Kyo, Makoto Nomura, Masaki Mishima, Chojiro Kojima
Small-Molecule Ligand Induces Nucleotide Flipping in (CAG)n Trinucleotide Repeats
Nature Chemical Biology 2005, 1, 39-43
DOI : 10.1038/nchembio708 PMID: 16407992
8) Shin-ichi Sato, Masatora Fukuda, Masaki Hagihara, Yukiko Tanabe, Katsutoshi Ohkubo, Takashi Morii
Stepwise Molding of a Highly Selective Ribonucleopeptide Receptor
Journal of the American Chemical Society 2005, 127, 30-31
DOI: 10.1021/ja0445589 PMID: 15631433
7) Masaki Hagihara, Tetsuya Hasegawa, Shin-ichi Sato, Susumu Yoshikawa, Katsutoshi Ohkubo, Takashi Morii
Ribonucleopeptides: Functional RNA–Peptide Complexes
Biopolymers 2004, 76, 66–68
DOI: 10.1002/bip.10576 PMID: 14997476
6) Shin-ichi Sato, Masaki Hagihara, Kenji Sugimoto, Takashi Morii
Chemical Approaches Untangling Sequence-Specific DNA Binding by Proteins
Chemistry – A European Journal 2002, 22, 5066–5071
DOI: 10.1002/1521-3765(20021115)8:22<5066::AID-CHEM5066>3.0.CO;2-0 PMID: 12412056
5) Takashi Morii, Masaki Hagihara, Shin-ichi Sato, Keisuke Makino
In Vitro Selection of ATP-Binding Receptors Using a Ribonucleopeptide Complex
Journal of the American Chemical Society 2002, 124, 4617–4622
DOI: 10.1021/ja016569x PMID: 11971709
4) Takashi Morii, Shin-ichi Sato, Masaki Hagihara, Yasuo Mori, Keiji Imoto, Keisuke Makino
Structure-Based Design of a Leucine Zipper Protein with New DNA Contacting Region
Biochemistry 2002, 41, 2177–2183
DOI: 10.1021/bi015820i PMID: 11841208
3) Takashi Morii, Tomohisa Tanaka, Shin-ichi Sato, Masaki Hagihara, Yasunori Aizawa, Keisuke Makino
A General Strategy to Determine a Target DNA Sequence of a Short Peptide: Application to a D-Peptide
Journal of the American Chemical Society 2002, 124, 180–181
DOI: 10.1021/ja017078f PMID: 11782163
2) Keizo Matsushita, Masaki Hagihara, Yukio Sugiura
Participation of Oligomerization through C-Terminal D Domain Region of Sp1 in DNA Binding
Biological & Pharmaceutical Bulletin 1998, 21, 1094–1097
PMID:9821817
1) Makoto Nagaoka, Masaki Hagihara, Jun Kuwahara, Yukio Sugiura
A Novel Zinc Finger-Based DNA Cutter: Biosynthetic Design and Highly Selective DNA Cleavage
Journal of the American Chemical Society 1994, 116, 4085–4086
DOI: 10.1021/ja00088a057
Proceedings
9) Masaki Hagihara, Kazuhiko Nakatani
Inhibition of DNA Replication by a d(CAG) Repeat Binding Ligand
Nucleic Acids Research Symposium Series 2006, 50, 147–148
8) Kazuhiko Nakatani, Shinya Hagihara, Yuki Goto, Akio Kobori, Masaki Hagihara, Gosuke Hayashi, Motoki Kyo, Makoto Nomura, Masaki Mishima, Chojiro Kojima
Solution Structure of a Small-Molecular Ligand Complexed with CAG Trinucleotide Repeat DNA
Nucleic Acids Research Symposium Series 2005, 49, 49–50
7) Gosuke Hayashi, Masaki Hagihara, Kazuhiko Nakatani
Application of L-DNA as a Molecular Tag
Nucleic Acids Research Symposium Series 2005, 49, 261–262
6) Masaki Hagihara, Tetsuya Hasegawa, Yukiko Tanabe, Shin-ichi Sato, Susumu Yoshikawa, Katsutoshi Ohkubo, Takashi Morii
Design of Sensing Ribonucleopeptides for Small Ligands
Nucleic Acids Research Symposium Series 2004, 48, 33–34
5) Shin-ichi Sato, Tetsuya Hasegawa, Masaki Hagihara, Masatora Fukuda, Katsutoshi Ohkubo, Takashi Morii
Optimization of an ATP-Binding Ribonucleopeptide Receptor
Nucleic Acids Research Supplement 2003, 3, 239–240
4) Masaki Hagihara, Akiyoshi Hirata, Katsutoshi Ohkubo, Takashi Morii
Design of a Ribonucleopeptide Biosensor
Nucleic Acids Research Supplement 2003, 3, 193–194
3) Shin-ichi Sato, Hirokazu Honjyo, Shinya Tsuji, Masaki Hagihara, Keisuke Makino, Takashi Morii
A New Strategy to Determine the Target DNA Sequence of a Short Peptide
Nucleic Acids Research Supplement 2002, 2, 205–206
2) Masaki Hagihara, Takashi Morii, Keisuke Makino
Recognition of Small Molecules by a Ribonucleopeptide
Nucleic Acids Research Supplement 2001, 1, 7–8
1) Makoto Nagaoka, Masaki Hagihara, Takashi Emori, Jun Kuwahara, Yukio Sugiura
Design of Zinc Finger-Based DNA Cleaving Molecules and Their Specific DNA Cleavage
Nucleic Acids Research Symposium Series 1994, 31, 157–158
Books
3) Masaki Hagihara
Guanine-Tethered Antisense Oligonucleotides as Synthetic Riboregulators
Methods in Molecular Biology, Vol. 1111, P. 197-208
Ogawa, Atsushi (Ed.) , Springer, (2014)
2) Shiori Umemoto, Changfeng Hong, Jinhua Zhang, Takeo Fukuzumi, Asako Murata, Masaki Hagihara, Kazuhiko Nakatani
Toward the Discovery of Small Molecules Affecting RNA Function
Chembiomolecular Science, At the Frontier of Chemistry and Biology, P. 59-67
Shibasaki, Masakatsu; Iino, Masamitsu; Osada, Hiroyuki, Eds., Springer, (2013)
1) Masaki Hagihara, Tetsuya Hasegawa, Shin-ichi Sato, Susumu Yoshikawa, Katsutoshi Ohkubo, Takashi Morii
Peptide Revolution: Genomics, Proteomics & Therapeutics. P. 556–558, T. K. Sawyer, Ed., American Peptide Society (2004)